Project Info


Merging Biocompatible Catalysis with Metabolic Engineering

Dylan Domaille | ddomaille@mines.edu

One powerful strategy for sourcing industrially relevant chemicals from biomass-derived carbon is metabolic engineering, a process in which an organism is genetically engineered to produce valuable commodity chemicals from sugar. However, several persistent problems plague these approaches. For instance, accumulation of the desired product in the media often harms the microbe, effectively creating a negative feedback loop: as the microbe makes more product, the health of the microbe declines, which severely limits the titer yield of product (i.e., g of product/L of culture). Moreover, there is a relatively narrow range of products that can be made in this approach, especially in comparison to the massive number of products that can be synthesized with synthetic chemistry.

To address this deficiency and improve the overall efficiency of biomass-conversion processes, we are interfacing catalytic upgrading reactions with microbial production of chemical building blocks in single flask processes. Using approaches fundamentally rooted in green chemistry, we identify chemical reactions that can upgrade bacterial metabolites concomitantly with bacterial production, greatly expanding the types of products that can be sourced from biomass.

More Information

http://www.domaillelab.com/project1.html

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5417690/

Grand Engineering Challenge: Develop carbon sequestration methods

Student Preparation


Qualifications

Required:
CH 221 and CH 222 (Organic I, II)
Recommended:
CH 428 (Biochemistry)
CH 462 (Microbiology)

Knowledge of sterile technique is ideal but not necessary.

Time Commitment

25 hours/month

Skills/Techniques Gained

Generation of mutant bacteria using classical microbiology techniques (mutagenesis/selection), including anaerobic culture techniques; sterile technique; gas chromatography (GC) quantification and identification of metabolites; 1H NMR analysis of metabolites.

Mentoring Plan

The undergraduate will work closely with a graduate student who is currently working on this challenge. The graduate student has successfully mentored other undergraduates in this program and will be available for the day-to-day questions and demonstrations. I work closely with the undergraduates to train them in the appropriate safety measures, and we have joint weekly meetings between the graduate student & mentored undergraduate to discuss experimental design and data interpretation.